A graduate student position in the Immunoregulation group, BioMediTech, University of Tampere, Finland
4.10.2016 | AjankohtaistaA graduate student position in the Immunoregulation group, BioMediTech, University of Tampere, Finland.
We are looking for a new member to join our team that investigates how the Proprotein Convertase (PCSK) enzymes regulate the immune system (see for example; Nature. 2008 Sep 11;455(7210):246-50., J Immunol. 2014 Dec 1;193(11):5470-9., J Leukoc Biol. 2015 Jul;98(1):73-83.). We are hoping to recruit a person that is self-motivated, curious and interested in the mechanisms of immunity. Previous experience with cell culture, FACS and in vivo models is advantageous. If interested please send a motivation letter and CV including contact information of two references to Marko.Pesu@uta.fi. Applications will be considered until the position in filled.
Postdoctoral Position in clinical MEG of Parkinson’s disease: Aarhus, Denmark
4.10.2016 | AjankohtaistaApplications are invited for a postdoctoral scientist post to support research into neurocognitive deficits in Parkinson’s disease (PD) at the Center of Functionally Integrative Neuroscience (CFIN), Department of Clinical Medicine at Aarhus University.
The successful applicant will work on a research project funded by the Danish Council for Independent Research, exploring the neurophysiological mechanisms of language deficits in PD patients using MEG and other techniques, and carrying out specific scientific research in collaboration with line manager and other team members. The postholder’s research will be centred on exploring functional deficits in speech and language processing in PD patients with and without deep brain stimulation implants. Ideal candidates will therefore have experience in clinical neuroimaging and in language research. Previous experience in using one or more of state-of-the-art neuroimaging modalities (MEG , EEG, etc) is essential; experience with neurological patients is desirable. Eligible candidates should hold a PhD or similar degree in a relevant discipline, including (but not limited to) physiology, medicine, psychology, neuroinformatics or neuroscience. The position is to be filled as soon as possible and is open for up to 3 years within the funding period allowed.
CFIN is an international multidisciplinary research centre based at Aarhus University’s Department for Clinical Medicine, Denmark. Our research groups are supported by state-of-the-art cognitive neuroscience facilities including research-only 306-channel TRIUX MEG system (Elekta Neuromag), fMRI systems (Siemens TIMTrio 3T, Magnetom Skyra 3T), PET, navigated TMS, EEG, eye-tracking equipment, Two-Photon Microscopy, etc., and have well-established clinical and other collaborations. Aarhus University provides an inspiring international research environment with top neuroscience facilities. Aarhus is a dynamic university city located on the Baltic coast in continental Denmark and surrounded by nature; it offers very high living standards, rich cultural and intellectual life, outdoor activities, excellent restaurant/nightlife scene etc.
Additional information regarding this position can be obtained by contacting Professor Yury Shtyrov, head of MEG/EEG at CFIN, who will also be available for discussions at the Biomag 2016 conference in Seoul. Deadline for applications: 15 October 2016. Further details and application procedures can be found at
http://www.au.dk/en/about/vacant-positions/scientific-positions/stillinger/Vacancy/show/854310/5283
FIMM is seeking applications for two postdoctoral researcher positions in the areas of computational systems medicine and epigenetics of complex diseases and traits
4.10.2016 | AjankohtaistaThe 2016 FIMMPOD Annual Call for Postdoctoral Researchers at the Institute for Molecular Medicine Finland (FIMM) at the University of Helsinki is now open, https://www.fimm.fi/en/news/1475056655. This year, the annual call is part of a joint call with the other members of the Nordic EMBL Partnership for Molecular Medicine, namely the Danish Research Institute for Translational Neuroscience (DANDRITE), the Laboratory for Molecular Infection Medicine Sweden (MIMS), and the Centre for Molecular Medicine Norway (NCMM).
FIMM is seeking applications for two postdoctoral researcher positions in the areas of computational systems medicine and epigenetics of complex diseases and traits. Detailed call announcements can be found on the FIMM Open Positions webpage: https://www.fimm.fi/en/open-positions and information about the FIMMPOD Professional Development Program for Postdocs and Senior Researchers can be found on the FIMMPOD webpages: https://www.fimm.fi/en/training/fimmpod.
The deadline for applications is 21st October 2016.
Research assistant for project on Computational Models of Small Genetic Circuits at the Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
26.9.2016 | AjankohtaistaResearch assistant for project on Computational Models of Small Genetic Circuits
Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
Applications are invited for a paid position as a research assistant or MSc thesis worker at the Laboratory of Biosystem Dynamics (LBD), Department of Signal Processing/Biomeditech, Tampere University of Technology (TUT), Finland.
The research project involves the making of computational models of small genetic circuits, based on live, single-cell microscopy data produced in-house.
The position is open starting from September 1st, 2016 onwards. Starting date is negotiable. Very competitive salary and contract length in accordance to TUT regulation. The project continues until the end of spring of 2017, but can be further extended. We are flexible on the number of paid working hours / week and other arrangements.
We appreciate:
* Basic skills in Matlab
* Knowledge of methods in Computational Biology.
* Desire to conduct scientific research.
To apply: Send a transcript of records and CV by email to andre.ribeiro@tut.fi y the end of August [subject ”project on computational models of small genetic circuits”]. We aim to fill the position as soon as possible.
The applicant will work in an interdisciplinary group with experts in molecular and computational biology, biophysics, signal and image processing, and biotechnology. We have theoretical and experimental research ongoing, and our lab is equipped with state-of-the-art technology for live, single-cell biology studies.
For further information, visit our web page: www.cs.tut.fi/~sanchesr/.
Andre S. Ribeiro, Associate Professor
PI of the Laboratory of Biosystem Dynamics
Department of Signal Processing, Tampere University of Technology
Tampere, Finland. Phone: +358 408490736
Email: andre.ribeiro@tut.fi
Research assistant for project on Signal Processing of Small Genetic Circuits at the Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
26.9.2016 | AjankohtaistaResearch assistant for project on Signal Processing of Small Genetic Circuits
Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
Applications are invited for a paid position as a research assistant or MSc thesis worker at the Laboratory of Biosystem Dynamics (LBD), Department of Signal Processing/Biomeditech, Tampere University of Technology (TUT), Finland.
The research project involves the use and development of Signal and Image Processing tools for live, single-cell microscopy data of genetic circuits’ dynamics.
The position is open starting from September 1st, 2016 onwards. Starting date is negotiable. Very competitive salary and contract length in accordance to TUT regulation. The project continues until the end of spring of 2017, but can be further extended. We are flexible on the number of paid working hours / week and other arrangements.
We appreciate:
* Good skills in Matlab
* Knowledge of methods in Signal Processing.
* Desire to conduct scientific research.
To apply: Send a transcript of records and CV by email to andre.ribeiro@tut.fi by the end of August [with subject ”project on signal processing of small genetic circuits”]. We aim to fill the position as soon as possible.
The applicant will work in an interdisciplinary group with experts in molecular and computational biology, biophysics, signal and image processing, and biotechnology. We have theoretical and experimental research ongoing, and our lab is equipped with state-of-the-art technology for live, single-cell biology studies.
For further information, visit our web page: www.cs.tut.fi/~sanchesr/.
Andre S. Ribeiro, Associate Professor
PI of the Laboratory of Biosystem Dynamics
Department of Signal Processing, Tampere University of Technology
Tampere, Finland. Phone: +358 408490736
Email: andre.ribeiro@tut.fi
Post-Doc Position at the Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
26.9.2016 | AjankohtaistaPost-Doc Position
Laboratory of Biosystem Dynamics, Tampere University of Technology, Finland
Applications are invited for a Post-Doctoral Fellow position at the Laboratory of Biosystem Dynamics (LBD) of the Department of Signal Processing and Biomeditech, Tampere University of Technology (TUT), Finland.
The position is open from September 1st, 2016 onwards. Starting date is negotiable. Competitive salary and contract length in accordance to TUT regulations.
The applicant will work in an interdisciplinary group with experts in molecular and computational biology, biophysics, signal and image processing, and biotechnology. The LBD is involved in national and international collaborations. We have theoretical and experimental research ongoing, and our lab is equipped with state-of-the-art technology for live, single-cell biology studies.
Project background: Bacteria process information so as to bind past events to future actions, making them adaptable to environment changes. This is made possible by semi-independent, tuned small genetic circuits that differ in structure, which defines their function. Meanwhile, the internal components, e.g. the kinetics of transcription initiation of the promoters, define their efficiency.
Project aims: This project will use theoretical modelling, synthetic genes and circuits, and single-cell data from time-lapse microscopy to engineer and study small genetic circuits, i.e., their dynamics, sensitivity to external signaling, robustness to fluctuations and evolvability. Depending on the applicant’s background, he/she is expected to focus on theoretical or experimental approaches, which will then be complemented by the team.
Qualification: The successful applicant should have a PhD in Biophysics, Computational or Systems Biology, Molecular Biology, Single-Cell Biology, Biotechnology, Signal Processing, etc.
For further information, visit our web page: www.cs.tut.fi/~sanchesr/.
To apply: send your CV, a letter of application, and a short project proposal (1 page max.) on the topics of gene networks, gene expression, or single-cell biology to Andre Ribeiro (Email: firstname.lastname@tut.fi).
Andre S. Ribeiro, Associate Professor
PI of the Laboratory of Biosystem Dynamics
Department of Signal Processing, Tampere University of Technology
Tampere, Finland. Phone: +358 408490736
Postdoctoral position announcement from McGill, Montreal, Canada
26.9.2016 | AjankohtaistaA postdoctoral or research associate position is available at the McGill Vision Research Unit, McGill University, in Montreal which is set within a large and integrated neuroscience program. Candidates should have a strong research background in human vision research and should have established expertise in fMRI data acquisition and analyses, along with experience in retinotopic mapping. Previous experience in Matlab programming is essential. On a day-to-day basis, the candidate will be expected to work independently and will be involved in the design, programming and running of human fMRI experiments and their analyses. The current areas of interest include binocular vision, visual plasticity, suppression and colour vision. There would also be scope for the candidate to develop other research projects aligned with the broad interests of the labs .
Applicants should send their cv, research statement and the names of three referees. Enquiries may be directed to:
Professor Robert Hess Professor Kathy Mullen
Post-doctoral position in Lund/Sweden
26.9.2016 | Ajankohtaistahttp://www.fens.org/News-Activities/Jobs/job-11121/
PhD position in bioinformatics and systems biology available at the research group of Systems Immunology at Medicum, University of Helsinki
26.9.2016 | AjankohtaistaPhD position in bioinformatics and systems biology available at the research group of Systems Immunology at Medicum (University of Helsinki)
A PhD student position is available at the research group of systems immunology of the University of Helsinki to join several projects (EU, Finnish Academy, Erkko foundation and Finnish Working Environment Fund) in the area of systems biology and bioinformatics related to the research fields of allergy and nanosafety.
We study the gene-environment interactions and specifically the host-microbiome interface in skin and lung physiopathology (1,2), and explore the complex network of cellular and molecular interactions involved in inflammatory disease pathogenesis. Moreover, we assess the immunomodulatory effects of engineered nanomaterials (3). In predictive nanotoxicology, the in vitro and in vivo assessment of the complex molecular effects of nanoparticles is used to characterize the mode of action of nanoparticles and to establish computational predictive models of toxicity (4). We extensively use omics technologies and systems biology approaches In all our projects.
The successful candidate has a background in statistics, bioinformatics and systems biology. Advanced use of R or equivalent programming language is also required. The PhD work will essentially consist of developing computational predictive models Inferred from the integration and analysis of large multi-layer omics data sets in close collaboration with other bioinformaticians, as well as immunologists, systems biologists and clinical experts.
The student will work mainly at the systems immunology group located in the Meilahti campus under the supervision of prof. Harri Alenius, and co-supervised by Dr. Dario Greco, leader of the systems nanosafety research group at the Institute of Biotechnology located in the Viikki campus. Funding of the PhD project is already secured from several projects until the end of 2017.
For more information please contact Harri Alenius (Harri.Alenius@Helsinki.Fi; Tel +358 50 4489526 / +358 29 4126460) or Dario Greco (Dario.Greco@Helsinki.Fi ).
References
1. Hanski I, et al. Environmental biodiversity, human microbiota, and allergy are interrelated. Proc Natl Acad Sci U S A 2012; 109:8334-9.
2. Fyhrquist N, et al. Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation. J Allergy Clin Immunol 2014; 134:1301-9 e11.
3. Rydman EM,et al. Inhalation of rod-like carbon nanotubes causes unconventional allergic airway inflammation. Part Fibre Toxicol 2014; 11:48.
4. Fortino V, et al.. A robust and accurate method for feature selection and prioritization from multi-class OMICs data. PLoS One 2014; 9:e107801.